miR165a
DB statistics:
  • Tuesday, January 18th 2022:
  • 114 miRNA familiesNews divider
  • 190 pre-miRNA sequencesNews divider
  • 7 developmental stages News divider
  • 190 hairpin structures
Expression
Switch to: Actin

In most cases the level of expression of pre-miRNA is lower than reference genes. To avoid showing the expression level as a negative value, the graph below is rescaled and the zero value on the y-axis corresponds to minimal expression level in the whole experiment (-7).

The expression values are rescaled. Read more

Expression Data

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Expression Data
Development stageactinPP2A
LogSDLogSD
seed3.863481.135833.935991.01636
10day-seedling2.96360.3768434.771760.20624
14day-seedling2.7014504.70160
25day-aerial2.649410.8385184.413890.840959
35day-aerial3.049350.4692154.816370.378472
42day-rosette2.519740.7854154.436820.989447
42day-stem3.376580.1404745.101940.085325
53day-rosette1.913620.5825973.756120.593468
53day-stem2.86360.3834334.281070.80397
53day-inflores3.620650.1886975.044690.243301
53day-silique4.044960.1640645.187560.153365
Raw Expression Data

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Raw Data
Development stagerepR2CtactinPP2A
ΔCt2^(-ΔCt)log10ΔCt2^(-ΔCt)log10
seed11.00035.3411.483.49e-4-3.4611.43.71e-4-3.43
21.00034.216.231.33e-2-1.876.361.22e-2-1.92
31.00037.8213.558.36e-5-4.0812.781.43e-4-3.85
10day-seedling11.00025.6412.781.42e-4-3.857.296.40e-3-2.19
21.00025.8412.591.62e-4-3.796.789.09e-3-2.04
31.00026.2214.853.39e-5-4.478.143.55e-3-2.45
14day-seedling10.99827.8514.285.03e-5-4.37.645.03e-3-2.3
2----N/D--N/D
3----N/D--N/D
25day-aerial11.00030.3917.535.27e-6-5.2811.782.85e-4-3.54
21.00027.7313.697.57e-5-4.127.455.74e-3-2.24
30.99925.9912.112.26e-4-3.656.551.07e-2-1.97
35day-aerial11.00025.811.343.85e-4-3.415.81.79e-2-1.75
20.99926.5213.87.01e-5-4.157.674.92e-3-2.31
30.99227.4214.235.21e-5-4.288.043.79e-3-2.42
42day-rosette11.00026.2912.751.45e-4-3.845.642.00e-2-1.7
20.99832.1717.794.41e-6-5.3612.12.28e-4-3.64
31.00026.8913.379.45e-5-4.027.84.48e-3-2.35
42day-stem10.99923.2111.523.41e-1-3.476.271.35e-1-1.87
20.99824.7212.172.16e-1-3.666.621.13e-1-1.99
30.99925.7712.391.86e-1-3.746.851.47e-1-1.83
53day-rosette11.00028.7514.73.75e-5-4.438.712.38e-3-2.62
21.00030.6418.362.98e-6-5.5312.641.57e-4-3.81
31.00030.5217.634.92e-6-5.3110.984.97e-4-3.3
53day-stem11.00027.113.687.63e-5-4.127.166.99e-3-2.16
21.00027.2712.51.73e-4-3.767.854.35e-3-2.36
30.99932.6515.042.96e-5-4.5312.092.29e-4-3.64
53day-inflores10.99024.5711.184.32e-4-3.366.021.54e-2-1.81
20.99926.5111.882.66e-4-3.587.326.26e-3-2.2
30.99124.4510.636.33e-4-3.26.041.52e-2-1.82
53day-silique11.00029.849.999.81e-4-3.016.041.52e-2-1.82
21.00028.59.21.69e-3-2.775.52.21e-2-1.66
31.00029.2210.258.21e-4-3.096.521.09e-2-1.96
NGS expression data
Expression of miR165a transcript in NGS data
Sequences
miRNA transcript
CUGCUAAGAUCGAUUAUCAUGAGGGUUAAGCUAUUUCAGUUGAGGGGAAUGUUGUCUGGAUCGAGGAUAUUAUAGAUAUAUACAUGUGUAUGUUAAUGAUUCAAGUGAUCAUAGAGAGUAUCCUCGGACCAGGCUUCAUCCCCCCCAACAUGUUAUUGCCUCUGAUCACCAUUUAUUGUUACAUUUUUUUUUGUUAAUUACUUGCGCAAAUUACAAAAGCUUGGUUUUUGUGAUGACUUUGAAUC
Short sequences
sequencetypearmstartend
UCGGACCAGGCUUCAUCCCCC
miRNA124144
TGCTAAGATCGATTATCATGAGGGTTA
primer5p228
TTCAAAGTCATCACAAAAACCAAGC
primer3p219243

For experimental procedure see:Materials and Methods


Cross-references
miRBasemiRBase record
ASRPASRP record
PMRDPMRD record
TAIRTAIR record
PubMed EntrezThe most up-to-date article(s) about miR165a found in PubMed

STRUCTURE

miRNA
miRNA*
primer 5p
primer 3p
sRNA

Length = 245 nt
MFE = -73.10 kcal/mol

COMMENTS